Example of a workflow

Please keep in mind that napari-convpaint is not meant to be a standalone software for segmentation. Therefore, its functionalities are limited to the pixel prediction. However, the napari ecosystem is very powerful and flexible. Here we use napari-convpaint as a first step for pixel prediction and complete the segmentation using tools bundlend in the napari-assistant plugin (developed by Robert Haase). You can see the complete workflow in the video below:

Adding napari-segment-blobs-and-thing-with-membranes

After installing napari-convpaint, you can open napari, go to Plugins menu and in the “Install/Uninstall Plugins…” section you can use the filter menu to search for napari-segment-blobs-and-things-with-membranes.

Press the install button to add it to your napari plugins.

For more information about the plugin and other ways of installing it please refer to the docs of the plugin.